Hello Biostars community, I'm encountering an issue while attempting to download a file using the Aspera ascp command. Here’s the command I’m using: "ascp -QT …

Hi all, I used to be able to download .sra files from SRA in the following way: $ nohup wget -c ftp://ftp-trace.ncbi.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR165/SRR1657561/SRR1657561.sra However, now it …

Hi, I want to download fastq files from this study. Tried pysradb, `pysradb download -p SRP165962 --out-dir`but it downloads all empty folders `anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR806/SRR8068516/SRR8068516.sra` Any better …

Hello, I tried to get the barcode file of SRR7191904. Thanks in advance for any help! Best, Yue fastq-dump --gzip --split-files SRR7191904.sra bin$ head -n …

Heloo, I tried to use fastq-dump to split SRR file into three files: fastq, barcode+uMI and reads. But the result only has one file. Thanks …

I used FTP to search SRR018260 that i want to download, however, SRR018260 sample can't be found. is the website error? or i should download …

I've been using [wonderdump.sh][1] from the Biostars handbook for some time. I'm now curious about the part that builds the ftp site url: PATH1=${SRR:0:6} PATH2=${SRR:0:10} …

Hello,dear everyone. I want to download some RNA-seq raw data from NCBI by using Aspera. i used the command ~/.aspera/connect/bin/ascp -i ~/.aspera/connect/etc/asperaweb_id_dsa.openssh -k 0 -T …

hey there, I installed aspera to transfer data from NCBI, for example this link starting to download a sra file... http://www.ncbi.nlm.nih.gov/public/?/ftp/sra/sra-instant/reads/ByRun/sra/SRR/SRR292/SRR292241 If I need fasta …

<p>Hi!</p> <p>I'd like to download a .sra file containing the fastq files for an experiment in the SRA using the wget command. I've been looking …