How to plot a bed file with CNV events?
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4.1 years ago
reui879 ▴ 10

I'm trying to plot a heatmap similar to this in R using complexHeatmap or pheatmap but with cell_id on the Y axis and white spaces where the there are gaps between genomic regions. I have this bed file. I'm hoping to have the genomic regions on the X axis with the chromosomes labelled.

https://pastebin.com/cMQK4qRj

https://i.stack.imgur.com/u9iDr.png

R heatmap • 790 views
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