Variant calling on aligned BAM files of WES
Could someone help in identifying SNVs in aligned BAM files alone? The index files provided are not .bai format. I know i need to use callVariants function, but the documentation is not clear on how to use this for WES. The exact code snippets would be better.
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Creating a
.baiindex is as simple assamtools index your.bam.What tool is this function from?
This applies to original question as well.