Bcftools filtering only 10% missing and heterozygous calls
Hello,
I would like to keep only 90% of missinfg and heterogygous genotype on all my samples. According to link I can filter missing like this bcftools view -i 'F_MISSING<0.1' in.vcf. What about heterozygous calls?
EDIT: I tried something like this, it doesn't seem to work.
-i 'F_MISSING<0.1 & F_PASS(GT="het")<0.1'
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