Define boundaries using modeller.
Hii.. I am modelling a protein using Modeller where i want to define boundaries of sequences (starting and ending position of target domains and template pdb) which i used to align. Can anyone help me in this job? My guide told me only to use modeller for this.
• 868 views
•
link
updated
by
Joe
•
written
by
bioinfo&me •
•
written
by
bioinfo&me •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to extract a peptide sequence (interval) from a FASTA file?
written by Peter •
-
Generate nucleotide multiple sequence alignment from protein alignment?
written by molly77 •
-
Mutation and Energy minimzation by using modeller
written by flavia •
-
Multiple Sequence Alignment tools
written by Rory Osborne •
-
Meaningful clusters in phylogenetic trees
written by n00bgenome •
-
Predicting 3D structure of a protein?
written by katherinebridges99 •
-
Modelling a region between 2 domains
written by Misty •
-
Perl code to get starting and ending position of list of peptides from the protein sequence of list…
written by genie66 •
-
Phylogenetic Tree Of Fragments Of The Same Protein (From A Metagenome)
written by Gimly_Gloin •
-
Novel Strategy For Improving Sequence Alignment
written by Pals
Could you please elaborate more on your problem? Are you modeling a domain or complete protein? Have you tired the AIDA server (http://aida.godziklab.org/), if you have a defined template? I think that will solve your problem. Is there any specific reason for using modeller?
Hope this helps!!
Hi, in its present form this is not an answer, so please use the comment functionality to discuss/gain additional information. I've moved the post for you this time, but please bear in mind for the future.
Hi, this is not a
Tooltype post - these are reserved for the announcements of new tools and releases. I've changed your post type back toQuestionfor now. Please just bear this in mind for the future.