how to find the resources of practising the basic genome assembly
I want to do some basic genome assembly on my own laptop computer. For example, assembling the E.coli genome from the NGS raw reads data. Which website can I get the basic genome assembly pipeline tutorial and the raw data as well? I have some NGS knowledge and Linux command line skill. I just want to walk through a real project.
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This looks like a clear source for learning assembly with SPAdes. SPAdes comes with some test E. coli data that you could use.
If you want some real E. coli data here is a recent PacBio Sequel dataset.