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Haplotype association in case control studies

Hi , As a part of my analyses, I used Haplotype association test from Beagle 3. The results were interstion, but the problem that if I want to take into accotunt cofactors (sex,age,BMI ...) I had to use the output fro beagle in R. This step was not clear at all for me, so does any one have an experience with this or knows an aletrnative ?!

Thank you very much

snp case-control beagle3
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updated by Kevin Blighe Kevin Blighe • written by mel22 mel22

1 answer

If you want to adjust for covariates (sex, age, BMI, et cetera), then you need to conduct a logistic regression analysis using the output of the haplotype analysis.

Kevin

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written by Kevin Blighe Kevin Blighe

Hi Kevin, thanks for your reply, I understand that I have to use Beagle out put but how ? Do you have an experience with this ?

Thank you

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written by mel22 mel22

What data do you have right now? - please paste some examples

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written by Kevin Blighe Kevin Blighe

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