Using vConTACT2 for viral sequences prediction
Can anyone help me with the usage of vConTACT2 (viral sequences prediction tool), a manual will also work, because I am unable to find any.?
genome
next-gen
sequencing
• 192 views
•
link
written
by
vishalchanda364 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Searching for online tools to prepare mitochondrial codon usage
written by puipui •Codon usage of the mitochondrial protein coding genes of Indian gaur (A). Relative synonymous codon usage (B). Codon usage frequency. <a href="https://imgbb.com/"><img src="https://i.ibb.co/gyh3XCj/search.png" alt="search" border="0" …
-
How to remove aligned sequnces?
written by vishalchanda364 •Hello, I have been working on a metagenomic data, and now trying to remove ribosomal protein using the blastp command in BLAST+, I want to …
-
vContact2 donwload and command line
written by vishalchanda364 •Is there any way that I can download and use command line to run the vConTACT2 software for MCL-Clustering of protein homologies and putative viral …
-
Family level taxonomic annotation
written by vishalchanda364 •Hello, After removing all the unwanted reads from my metagenomics data (unmapped reads - after sequence alignment) I am having the putative viral contigs for …
-
Sequence Alignment using Bowtie2
written by vishalchanda364 •Hello, I have been working on the metagenomics Illumina paired end data (2x150 seq length), but came across with a mistake done by me. Now, …
-
Clustering using CD-HIT and redundancy removal
written by vishalchanda364 •Hello, Can anyone help me with the command to run CD-HIT for clustering the aseembled metagenomic data.? And I also need to know, how may …
-
open Reading Frame Prediction
written by vishalchanda364 •Can CD-HIT tool be used for ORF Prediction? If not can anyone suggest me the best tool for the same.?
-
Metagenomics Analysis Pipeline
written by vishalchanda364 •Hi there, I am new to metagenomics analysis and I am doing a virome analysis from the sample, can anyone help me suggesting the best …
-
Viral Encoded miRNA prediction and target identification
written by micro32uvas •Hi Everybody, Can anyone help me in prediction viral encoded miRNAs. I have already tried VmiR, Mirna Fold, Mature Bayes for the prediction and then …
-
How To Blast Multiple Contigs To The Reference Database?
written by vibhanim.21 •<p>i have multiple contigs in fasta format after assembling the reads. i also have 33 reference genome sequences. i want to blast the query sample …