How extract gene TPM from GTEx?
I would like to know, is there any way to download Gene TPM data from GTEX from different part of the Brain?
I have downloaded 'GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz' an 'GTEx_Analysis_v8_Annotations_SampleAttributesDD.xlsx' files https://www.gtexportal.org/home/datasets, but I do not know how can I separate brain-related data?
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You need GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt instead of
GTEx_Analysis_v8_Annotations_SampleAttributesDD.xlsx
the one you are using is meant to describe the columns of the actual "sampleAttributes" table
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