chromosomal distribution with sequence data
how can I extract chromosomal distribution for selected gene, when I have genome, gene, .gff and protein data. how to locate genes on chromosome.
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shwetamgr1 •
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shwetamgr1 •
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I honestly think that significant piece of information is missing from this question...What is "chromosomal distribution"?
If you're referring to distribution of reads across specific regions (i.e. coverage/depth) in a BAM file, you can try mosdepth.
To locate genes on a chromosome, you can use the genomic coordinates in the .gff file you have.