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Trouble installing mapper.pl from mirdeep2

Hi everyone Im triyng to install mirdeep2 in ubuntu, both with conda and from source code (following this tutorial)

miRDeep2.pl works fine but for mapper.pl and quantifier.pl I get the following error message

Please run the install.pl script first before using the miRDeep2 package
The install script is located in /home/superuser/CAP-miRSEQ/build/mirdeep2_patch-mas so just do

cd /home/superuser/CAP-miRSEQ/build/mirdeep2_patch-mas
perl install.pl

Does any one have some idea?

Thanks in advance, Jose

mirdeep2 rna-seq cap-mirseq
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written by jomagrax • jomagrax

1 answer

As explained here If installing from conda just type 

touch ~/.conda/envs/mirdeep2/install_successful
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written by jomagrax • jomagrax

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