Input data in GAGE Analysis · Biostar

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Input data in GAGE Analysis

Hi everyone. I'm trying to run GAGE analysis but I'm having problems in understanding which kind of data I should use as input. I don't have access to all the previous analyses, but I just have an excel resulting from EdgeR analysis which has the TPM, the RPKM, the logCPM, the logFC and the FC. I tried to use the TPM, the logFC and the FC but in all cases I obtain not significant pathways. It seems strange to me becuase all other analyses gave me significance.

rna-seq gage

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written 6.5 years ago by francesca3 •

I think I should use the option rank.test=TRUE..

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written 6.5 years ago by francesca3 •

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