What is MSTRG?
I've started learning RNA-seq only recently. I study Arabidopsis thariana. I used hisat2, stringtie and ballgown(refer to https://www.nature.com/articles/nprot.2016.095).
I couldn’t understand “MSTRG〇〇〇〇”. Is this gene Id or something?
Will you kindly tell me MSTRG? Thanks in advance for your help.
1 answer
Hi Arabi, MSTRG it's a way that stringtie uses to assign the gene names and isoforms, I went though this time ago and if I remember right I fixed this problem by using a different annotation file (GTF)
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