Dear All, I am following the [TCGAbiolinks tutorial][1] for conducting differential expression analysis on TCGA data ("TCGAanalyze: Analyze data from TCGA" section). I have 2 …

Hello Friends, I have downloaded TCGA data (gene expression, methylation) using TCGA2STAT. Now, I want to use TCGAbiolinks package for performing subsequent analysis. I want …

i am working on TCGA database and want to prepare clinical data for analysis and normalization.i have dta in txt and csv format ,for TCGA …

I am working on TCGA data set of LUAD. i have downloaded the data mi RNA and clinical data in CSV format can anyone explain …

Dear all, I am working with TCGAbiolinks for a while. It was working smoothly until now. I'd like to change some setting of the script …

The following command for TCGA - clinical data gives error in **TCGAbiolinks**. I am trying to parse XML clinical data query <- GDCquery(project = "TCGA-PRAD", …

I want to know the difference between TCGA data we download from firebrowse.org and TCGA data we download with GDCdownload function. The things i realized; …

Hi All, i am using R and Bio conductor to analyze tcga-brca raw microarray data. i am using tcgabioloiks package for do this i am …

Hi! I'm using R and TCGAbiolinks to retrieve data and clinical data from GDC. To do so I use the following: library(TCGAbiolinks) patientdownload<-function("TCGA-LIHC"){ clinquery<-GDCquery(project = …

I want to analyze the data of tcga on methylation, but I am having difficulty as the downloaded file is in idat format. Could anyone …