Small Rna Analysis
1 answer
This may be a starting point..
You can use tRNA-scan-SE to mask out tRNA http://lowelab.ucsc.edu/tRNAscan-SE/
Mask out other ncRNA (5S, 16S, 18S, and 23S rRNA) using blast - you may easily find multi-fasta files of these from somewhere.
check this out http://www.ncrna.org/frnadb/download - you can use there ncRNA fasta file to blast against.
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