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Example NGS data

Hi,

I am new to analyzing NGS data and I am trying to get familiar with Cutadapt. Can anybody suggest a website where I can download an example fastq file containing several reads that I can use as the input data for Cutadapt?

Thanks for your help.

KG

next-gen illumina fastq cutadapt
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updated by tothepoint tothepoint • written by ksgajula • ksgajula

Google would give you a bunch of links to download sample FASTQs from. What have you tried? Please invest some more effort in your problems before asking others to help you out.

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written by Ram Ram

Thanks for your kind reply...I did search but couldn't find. May be I didn't search it with the right terminology. Could you help me?

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written by ksgajula • ksgajula

What did you search for?

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written by Ram Ram

2 answers

Qiagen's website provides example Illumina data (fastq format) for Pseudomonas aeruginosa (616 MB). Can find the link to download data from the following link:

https://www.qiagenbioinformatics.com/support/example-data/

Can start using cutadapt on this data first.

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written by Prakki Rama Prakki Rama

Thank you..I really appreciate you for the link!

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written by ksgajula • ksgajula

A random search for fastq file : https://www.ebi.ac.uk/ena/data/view/SRX278147 You have all the option to search according to your need.

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written by tothepoint tothepoint

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