Decontaminate RNASeq data from other cell types?
Hello all,
Very ambitious question coming!
So I have RNA-Seq data from CD4+ cells, which are selected using a kit. However I used CIBERSORT on them and I see that there is a significant contamination with other immune cell types, mainly B and NK cells. I was wondering if there is any way to extract only the cells of my interest?
Thanks and apologies in advance! :)
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Ligand-Receptor analysis using LIANA - question about specificity
written by abedkurdi10 •
-
Confidence in CIBERSORT (LM22) Deconvolution Output for Rare Cell Types — Best Practices?
written by Pumla •
-
Cell Type and Gene Specific Survival Analysis in scRNA-seq
written by Ergün •
-
high resolution deconvolution problem
written by demoraesdiogo2017 •
-
RNA-Seq Deconvolution algorithm for FACS pre-sorted cells
written by Stefan •
-
WGCNA and SC-RNA Seq data
written by pennakiza
-
Query about Z-scores
written by Alex Gibbs
-
RNA-Seq database for immune cells
written by Daiwei Tang •
-
SIGNATURE MATRIX IN CIBERSORT
written by pierangela.bruno •
-
deconvolution of heterogenous cell types in RRBS data
written by rahel14350 •
