Resume Repeatmasker job stopped for maximum execution time on the queue system - genome assembly
Hello I would like to resume a job stopped in repeatmasker, which was terminated by the maximum runtime on a queue system.
I have the directory with the process files, but I can't resume parsing where it left off. I've tried to repeatmasker directly from this directory, but it creates a new folder and starts parsing again
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lieven.sterck
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marcos.a.godoy.f •
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marcos.a.godoy.f •
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as far as I know, Repeatmasker is not able to resume unfinished runs, so you'll always have to restart from the beginning (in a diiferent queue / server as genomax pointed out as well)
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That means repeatmasker is unable to resume where it left off or was rather forcibly killed by the job scheduler. You will need to find a longer queue (or a different server) to get the job to complete.