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Looks like installed umi_tools, but still does not work

Hello, Everyone,

It looks like I have already installed umi_tools, but still does not work.

Thanks in advance for any suggestion!

Best,
Yue

Edit by ATpoint

=> Removed code and log messages to shorten post.

=> See the duplicate post ( problem in install UMI_tools ), comes down to a PATH problem.

rna-seq
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updated by ATpoint ATpoint • written by yueli7 yueli7

Hello, Brice Sarver,

Thank you so much for your response!

Would you please explain clearly?

I have no idea of "confirmed that it's in your $PATH or appended to your $PATH".

Thank you again!

Best,

Yue

• 0 views • link
written by yueli7 yueli7 
li@li-HP-Pavilion-Desktop-590-p0xxx:~$ PATH=~/.local/bin:$PATH
li@li-HP-Pavilion-Desktop-590-p0xxx:~$ umi_tools --help
For full UMI-tools documentation, see: https://umi-tools.readthedocs.io/en/latest/


 umi_tools.py - Tools for UMI analyses
 ===============================================

:Author: Tom Smith & Ian Sudbury, CGAT
:Release: $Id$
:Date: |today|
:Tags: Genomics UMI

There are 6 tools:

- whitelist
- extract
- group
- dedup
- count
- count_tab

To get help on a specific tool, type:

umi_tools <tool> --help

To use a specific tool, type::

umi_tools <tool> [tool options] [tool arguments]
• 0 views • link
written by yueli7 yueli7

Hello yueli7!

We believe that this post does not fit the main topic of this site.

Duplicate towards content of problem in install UMI_tools

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

• 0 views • link
written by ATpoint ATpoint

Hello, ATpoint,

Thank yo so much for your carefully maintaining this so useful site.

Please close it.

Thank you again!

Best,

Yue

• 0 views • link
written by yueli7 yueli7

Please take no offense, it is simply to keep things organized in a single thread rather than having information spread over multiple threads so people do not invest effort into multiple (identical) threads.

• 0 views • link
written by ATpoint ATpoint

Thank you again!

It is so fortunately that we have this so useful site.

Thank you again!

Beat,

yue

• 0 views • link
written by yueli7 yueli7

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