Agreed. Alternatively, you can directly download fastq files from the ENA (whichs mirros NCBI) as described here:
Fast download of FASTQ files from the European Nucleotide Archive (ENA)
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Do you mean only 1
.srafile? That's normal, if you download that sra file and extract you will see 2 fastq file for each end usually.Thank you for all the reply..i solved it ...i used ENA-EBI ..we can directly upload from ENA to galaxy