SnpEff database with maker annotation format

Hello,

I am trying to use SnpEff but I got a non model organism. I am trying now to build the database but my annotation is a Maker GFF format, and I got some issues

Anybody have experience with converting the maker GFF format to an other compatible one ) (ex: to GTF)

Thanks for your help.

maker snpeff

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updated 6.7 years ago by prince26121991

• written 6.7 years ago by Picasa

1 answer

Have you gave it a try? The easiest way is to use the gffread program that comes with the Cufflinks software suite (Tuxedo)

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written 6.7 years ago by prince26121991

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