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Trying to build a transcript data base using makeTranscriptDbFromBiomart but got a error.

Hi guys I am trying to learn use R for RNA-SEQ analysis and I am trying some functions and guides from bioconductor, however I am getting some errors.

http://www.sthda.com/english/wiki/rna-seq-differential-expression-work-flow-using-deseq2#introduction

One of them I quickly found a answer, because they change the name of the fuunction 8(.

But this error I didn't find any answer still:

txdb <- makeTranscriptDbFromBiomart( biomart="ENSEMBL_MART_ENSEMBL",
                                     dataset="hsapiens_gene_ensembl" )
Error in makeTranscriptDbFromBiomart(biomart = "ENSEMBL_MART_ENSEMBL",  : 
  could not find function "makeTranscriptDbFromBiomart"

I import the library as due

library( "GenomicFeatures" )

But got that error.
Any tip? thanks

rna-seq r software error
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updated by Ram Ram • written by schlogl schlogl

1 answer

I got it done with makeTxDbFromBiomart... well I guess they change the functions names a lot in R packages.

Thsnks

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written by schlogl schlogl

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