Analysing MACE-Seq data
Hello everybody,
I have a very fundamental question. For fast transcript-level analysis I use the quasi-mapping-based mode of the salmon tool. For cost reduction we are going to switch to massive amplification of cDNA ends (MACE)- Seq using an Illuminda MiSeq. Do you have any experience if I can run quasi-mapping on MACE-Seq data sets or what do I have to consider for the analysis.
Best regards Chris
• 841 views
•
link
written
by
Chris.Vogeley •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Salmon transcript-level to gene-level quantification
written by Mitmischer •
-
3' enrichment vs full-length sequencing
written by vevvo •
-
Can Salmon's quantification method accommodate concatenated reads of varying length (from independe…
written by c_dampier
-
Mapping paired-end reads to a draft genome using HISAT2
written by Farbod
-
Erroneous repeat insertion problem with Takara/ClonTech SMARTer Stranded Total RNA-seq kit v2 - Pic…
written by james.hrastelj •
-
Tophat multiple or unique mapping criteria
written by maple964 •
-
Recommendations for miRNA-Seq quantification with Salmon
written by labadorf •
-
Mantain mapping reads to chloroplast and mitochondrial wheat genome?
written by dianadd87 •
-
Removing low quality ends from a fastq file
written by Varun Gupta
-
Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
written by mhockin
