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Is there a database with calculated Ka/Ks ratios for human/mouse genomes?

The header pretty much sums up my question. I need (somehow calculated) Ka/Ks ratios for human/mouse genomes. Is there any database with calculated ratios for each ortholog? Otherwise, maybe someone knows an article with a table where the ratios for all orthologs are listed? Or do I need to collect the ratios from a few articles or calculate them myself?

evolution database
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updated by choosingusername • choosingusername • written by little_more • little_more

1 answer

Ensembl biomart proivides the list. https://www.ensembl.org/info/data/biomart/index.html

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written by microfuge microfuge

But BioMart provides only a list of orthologs and not pre-calculated Ka/Ks ratios, doesn't it?

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written by little_more • little_more

It does provides ka/ks values in Attribute -> Homologous (radio button) -> Orthologs -> scroll down to locate species (mouse) -> radio buttons (dn with mouse and ds with mouse)

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written by microfuge microfuge

Yes, I've already found it.

Thank you very much!

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written by little_more • little_more

could any of you please give more details into how to get the dn ds? I couldnt find such radio buttons, neither for the homologous nor after locating the species..

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written by choosingusername • choosingusername

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