Hi there, I am facing a problem which, in spite of all the googling I did, I still haven't solved. I have to do GO enrichment on a non-model organism. I understood that, as long as I import a data-frame in R with the gene name in the first column and the GO number in the second, I can use the enricher function for the "simple" GO enrichment.

My problem comes because I want to use the compareCluster function (which is fundamental in my case as I have a dataset with multiple groups) on the non-model species. Has anyone done that? If so, can you share the code on how to do that?

Thanks a lot for your continuous help All the best Luca