yes I did. the ones I found out were paid
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tools for MLST analysis
is there any tool to perform MLST analysis of bacterial whole genome samples/assembly ??
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Yes, loads. Have you googled?
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I find that highly unlikely:
- https://pubmlst.org/software/database/bigsdb/
- http://sanger-pathogens.github.io/mlst_check/
- https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.12170
As I say, there are lots.
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Any particular bacterial species? Public Health England has one for Salmonella, although it's abit old now:
https://github.com/phe-bioinformatics/MOST
My colleagues at warwick have largely superceded it with Enterobase:
https://enterobase.warwick.ac.uk/
(If you bacteria is one of those in the DB).