genie3 and cytoscape
Dear all
I have done the differential gene expression using DEseq and extract the top 100 upregulated and top 100 downregulated I use geni3 for the regulatory network , the entry file was 200 and output more than 20000 interaction. I try to use cytoscape but the result was not as expected. which parameter or setting is recommended for the differential expression data and working with raw count??
please if there any other recommended tool for the interaction and visualization
Kind regards
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