problem using UniprotR's " GetFamily_Domains() "
I'm having trouble using the GetFamily_Domains() function in Uniprot R. Here is my code after installing the package and adding it to my library:
uniprot_ID <- "Q9HCE5"
domain_list <- GetFamily_Domains(uniprot_ID)
"Warning message:In file(file, "rt") : cannot open URL 'http://www.uniprot.org/uniprot/?query=accession:Q9HCE5&format=tab&columns=comment(DOMAIN),comment(SIMILARITY),families,feature(COILED COIL),feature(COMPOSITIONAL BIAS),feature(DOMAIN EXTENT),feature(MOTIF),feature(REGION),feature(REPEAT),feature(ZINC FINGER)': HTTP status was '400 Bad Request'"
When I copy the URL and paste it into chrome it opens fine... so I'm not sure what to do here.
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Your URL seems correct in principle, and the http request is redirected to https. But it might help to use https instead of http straightaway? I'm not familiar with this R package. https://www.uniprot.org/uniprot/?query=accession:Q9HCE5&format=tab&columns=comment(DOMAIN),comment(SIMILARITY),families,feature(COILED%20COIL),feature(COMPOSITIONAL%20BIAS),feature(DOMAIN%20EXTENT),feature(MOTIF),feature(REGION),feature(REPEAT),feature(ZINC%20FINGER)