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Finding depth of genes

Hi there!

I have just generated a fasta file, containing the genes (with corresponding gene function names) of a bin. The bin was found using Maxbin2 and the genes were then found using Prokka. The next step, is to find the depth of each of the genes. I have the raw reads, and were planning to use BWA on the genes, with the raw reads. Is this the correct procedure?

Thanks

snakemake depth prokka samtools

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