More posts like this
-
Best practice for RNA-Seq aligned sequences data for visualization via IGV
written by TS •
-
How to resolve Basic4cseq package printwigfile function error
written by koushikayaluri •
-
What's the difference between DESeq and EdgeR?
written by Novogene •
-
RNA-seq: indexing without sorting
written by Rakesh Tiwari •
-
Question: Visual interface operation 4C-seq analysis process
written by xiaokai.li2019 •
-
I have gene lists with fold changes/FDR from RNA-seq, what's the possible downstream analysis I can…
written by htchd •
-
Only one enzyme for 4c-seq analysis, How to analyze ?
written by htchd •
-
fastq files from pair-end sequencing, for 4c-seq analysis, How to analyze ?
written by htchd •
-
How to analysis 4c seq 3c seq data
written by woongjaej •
-
Bacterial RNA-seq analysis
written by mcff23 •
Given that you do not any details I suggest you search PubMed for recent benchmarking papers e.g. this one from a colleague of mine, which she published very recently: https://www.ncbi.nlm.nih.gov/pubmed/31134276
Thanks for your suggestion. I read that paper and tried to use Splinter's methods to do analysis, but their R code is hard to follow. The data I used as input is from pipe4C pipeline. Do you know if there's any explanation of Splinter's code?