Call fusion genes from WES data
Hi,
which programs can I use to call gene fusions from WES data?
I know about Comrad, CRAC and FusionMap whcih can be used for fusion gene detection in WGS. With which programs did you make good experiences? Btw, can I also use RNA-Seq focussed tools like arriba and star-fusion to call fusions from WES data or this approach a dead end?
Thanks for your advice!
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Do you expect your fusion gene to have breakpoints in a coding sequence?
This could happen. I also want some tools for WGS and WES, but seems most tools are design for RNA-seq.