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Bowtie build output folder

Hi, I would like to put the output files from Bowtie index build command into a folder different from current. Is there a way to insert a path for output index files into the bowtie-build command? Or a config file to change default directory?

alignment
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written by netsam • netsam

Thanks very much. I'll bother you for other question about configuring a server for my lab. Thanks again !!

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written by netsam • netsam

1 answer 

mkdir OutputFolder
bowtie-build your.fasta ./OutputFolder/your_index_prefix
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written by ATpoint ATpoint

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