how to create chain files using two genomes of the same species
I am trying to use liftover, do you know where I can find chain files for apple(Malus domestica)? or how I can create one?
• 1,370 views
•
link
written
by
hzaujsxu •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to choose LiftOver chain file
written by ttom
-
Liftover GRCh37 to hg38 1kg/GATK.
written by ManuelDB
-
Gene Ontology for the species Malus domestica
written by sangi •
-
Is there a list of high Linkage Disequilibrium (LD) regions for genome Build 38?
written by yy237 •
-
Making chain files
written by mc2548 •
-
Performing liftOver between genome assemblies not available on UCSC genome browser
written by br.tania •
-
Best tools for lifting over genome coordinates for non model organism (custom) reference genomes
written by William
-
chain file for maize
written by shinken123
-
How Do You Convert A Sam/Bam File To A Psl Or Axt Format?
written by lp364 •
-
Produce Interspecies Liftover Chain
written by kyle.oliveira •
I use this https://github.com/wurmlab/flo . Works quite nicely and is easy to run.
ok,I will try it. Thanks a lot.