Annotating Agilent micro array probe sequence with gene
Is there any way to convert Agilent Probe sequence to gene ID? I have got ~500 Agilent Probe sequence which needs to be annotated with GRCh38 gene id.
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You can use biomaRt. Which Agilent array is it? Please paste some sample IDs.
I only have probe sequences not probe ID. The probe id have been masked . I assume biomaRt converts probe ID not sequence.
@kevin, it is customized human 4x44K Microarray K
Surely you can contact the group/person that/who designed the microarray and, thus, obtain a mapping to genes for the sequences?
Indeed, that is an option. But i was wondering if there is some way to blat the sequence to a specific genome version and get the gene details.
Yes, that is a possibility.