Isoform level TCGA RNA-seq Expression data
I have Isoform level RNA-seq data from The Cancer Genome Atlas and I want to check the difference the difference in the level of a particular isoform between cancer and normal samples. Is there any software or R package which I can use to plot a boxplot showing difference in that isoform between normal and cancer sample with p-value?
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hofman.bartlomiej •
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deepak18 •
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deepak18 •
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If I may ask, how did you obtain Isoform level RNA-seq data from TCGA? I am trying to do so via TCGAbiolinks R package, however, without positive results