Given a list of TFs, are there tools that are able to give me the list of genes known to be regulated by these TFs?
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written
by
Eisuan •
1 answer
1) See the post below. It looks very close to your question.
Tf And Gene(S) Regulated By Them
2) The following post looks as a repeat of your question, but the answer is not direct IMHO.
extracting targe genes of a list of TFs
3) If the information above is not enough, try to look at this article as well:
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
Rekin's Janky, Annelien Verfaillie, Hana Imrichová, Bram Van de Sande, Laura Standaert,
Valerie Christiaens, Gert Hulselmans, …
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003731
4) What species interest you? There are some plant similar questions in 'Biostars', for example.
But you may need information like that:
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