Differentially accessible and known enhancer overlap
Hi everyone,
I want to see if my differentially accessible peaks that I obtained from ATAC-seq comparisons overlap with known enhancers. I read people using bedtools intersect to see if there is overlap but there is usually no mention of the minimum length/percentage of overlap required. What would make sense to determine whether a peak region truly overlaps an identified enhancer?
Thanks!
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p4alindromic •
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