Which pipeline is better for the pre-processing of the single-cell transcriptomics dataset?
Hi I have planned to analyze some scRNA seq dataset.
The first will do pre-processing in Seurat, thereafter shift into Scanpy
Does it recommendable? or there are any alternative ways?
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Why python is such a hard requirement?
Hi what did you mean?
Hi B- for bioinformatics
Why are you looking for a pipeline to work specifically with Python? why can't you just use Seurat ?
If you have to use python for downstream analysis, why not do pre-processing in scanpy from the very beginning?