Sliding Window to cluster sequence in multi fasta in R.

I have a multi-fasta file with thousands of sequences of ~1000bp each. I need to divide them as sliding window into length 100 and 120 with step size 10. I have found codes in R but that won't work in Multi Fasta. Codes in R is very much appreciated.

sequence r alignment

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written 7.0 years ago by adhirajnath14 •

I have found codes in R but that won't work in Multi Fasta. Codes in R is very much appreciated.

Use apply or a loop. Please do not expect us to create working, well-tested code for you.

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written 7.0 years ago by Ram

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