This is a test version of Biostars. For the public version, visit https://www.biostars.org.
SNP input data for Arlequin

I got the population.haps.vcf file from Stacks and converted to .arp file using PGDSpider, but still is not working in Arlequin. I appreciate your help for preparing Arlequin input file. I have 48 samples from 8 populations. Do I need to edit the file?

Thanks!``

ddrad
• 3,758 views • link
updated by strive • strive • written by mahnazkiani mahnazkiani

What is your issue? I have ran across the issue of Arlequin not showing any progress during an analysis, and just had the analysis done in DnaSP instead.

• 0 views • link
written by Gio12 Gio12

I tried to use DnaSP as well but when I convert my data to .NEXUS by PGDSpider it is not readable in DnaSp

• 0 views • link
written by mahnazkiani mahnazkiani

Hi:

Have you solved your problem? I have also been using Arlequin recently and have encountered the same problem, but I don't know how to deal with it, do you want to talk about it? (The VCF file is obtained by stacks v2.55)

Thanks

Ling

• 0 views • link
written by strive • strive

0 answers

No answers yet.

Log in to answer this question.

More posts like this