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Blastn .XML to FASTA

I have run this command:

blastn -query work.fa -task blastn -db nr -out out.XML -outfmt 5 -evalue 1e-10 -word_size 4 -num_alignments 1 -num_threads 15

enter image description here

Could you please help me to convert this .xml file to fasta??

Thanks in advance

alignment
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updated by ATpoint ATpoint • written by baurumon • baurumon

You better do not use imggmi as image hoster, it does not behave well on Biostars. Better use something like Imgur.

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written by ATpoint ATpoint

@Pierre has a solution posted here: Convert XML file to FASTA

You are in general best off using tab delmited output formats since they are are easier to parse. You will then need to get the fasta sequence for the parsed identifiers using blastdbcmd as one option.

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written by GenoMax GenoMax

thank you for the suggestion

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written by baurumon • baurumon

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