Understanding of fields meaning in HapMap.hmc.txt file from UNEAK pipeline in Tassel 3.0
Where can i find description for all fields in HapMap.hmc.txt file i got in UNEAK pipeline? I need that to calculate depth of coverage (DP) and allele depth (AD) to use these for VCF file filtration. Is there any plugin in Tassel to filter out variants in resulted VCF file based on DP and AD values? Additionaly, i'm wondering, what else information containing in HapMap.hmc.txt file i could use for my VCF file filtration? Thanks!
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