How to get species name from patric accessions

Hi folks,

I'm using salmon to quantify some read counts of bacteria in my transcriptomic samples. I'm planning on analysing this in EdgeR but am stuck at converting the PATRIC accessions into species name so I can make my tx2gene table with tximport.

Anyone have any ideas on how I could go about this?

r rna-seq gene

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written 7.0 years ago by yryan •

Can you give a representative example?

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written 7.0 years ago by ATpoint

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No answers yet.

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