Biopython PRANK Alignment
Hi!
Does someone used PRANK in a Biopython script? I cannot understand the parameters used.
I tried this one, but no file with alignments was generated.
>>> from Bio.Align.Applications import PrankCommandline
>>> prank_cline = PrankCommandline(d="unaligned.fasta",
... o="aligned", # prefix only!
... f=8, # FASTA output
... notree=True, noxml=True)
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Ram
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catarina.tserrano •
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catarina.tserrano •
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You have the command, but did you run it? Add another line with
prank_cline()