How to extract exon, intron and UTR regions from gene?
Hi all! I have protein coding and non-coding genes bed file with coordinates from this bed files I want to extract the how much percentage of exons, introns and UTRs regions are present in a gene. how to extract can you suggest me?
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ganeshram •
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I would start by extracting these annotations from a GTF file and then intersect your files with the obtained annotations.
A: how to get intronic and intergenic sequences based on gff file?
HI! Thanks for the quick response its very valuable suggestions.
I have hg19.gtf file but I don't have hg19.gff file. Do you know which site i can get GFF file?