GTF separate coding and non-coding exons
Is there a way to keep coding and remove non-coding regions in a GTF file? UTRs are non-coding and CDSs are coding, so the regions are [usually] well-defined, but some tools look at exons. However, exons can be both. Is there a way to break up and extract coding exons?
The easiest solution I can think of is to remove all UTRs and exons, then copy CDSs and rename them exon. Not sure if I may be overlooking something there.
1 answer
Log in to answer this question.
More posts like this
-
Drosophila melanogaster dm3 intron percentage too high
written by Christian •
-
How to identify exon sequences
written by Ak •
-
Extract data from GTF file
written by bioinformaticsnewbie •
-
Coordinates long non-coding RNAs
written by luffy •
-
RNA-SeQC: Failed to parse the GTF: Detected non-unique Exon ID
written by akulan •
-
How to extract exon, intron and UTR regions from gene?
written by ganeshram •
-
How to recompute coding sequences from a psl format ?
written by Thomas B. •
-
How do I get the lengths of different regions targeted by the Nextera expanded rapid capture exome …
written by anp375
-
Extracting Exon/Intergenic/Intron Region Of Human Genome
written by Dataminer
-
Why Total Exon Length Of 2/3Rds Of Ucsc Knowngenes Is Non-Divisible By 3?
written by Chronos
