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star alignment
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Filtering uniquely mapping reads from bam files generated from STAR
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running salmon on bam files
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How to split both bam files and annotation files as per chromosome number?
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RNA-Seq analysis using STAR and Salmon
written by rachel.kubik12 •Hello! I am having some trouble figuring out how to use Salmon. I have around 30 different samples which I trimmed using bbmap then aligned …
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STAR/StringTie compatibility on tag HI in the BAM alignment file
written by Megan •Hi, I am trying to do transcript reconstruction and quantification using StringTie on BAMs generated by STAR. According to https://ccb.jhu.edu/software/stringtie/#install, modifying the tag HI in …