DESeq2 assay weights usage
I am using the ZINB-WAVE tutorial as mentioned here to perform single cell analysis: https://github.com/mikelove/zinbwave-deseq2/blob/master/zinbwave-deseq2.knit.md
I could not find any documentation indicating how the weights generated by ZINB-WAVE are actually used in DESeq2. (I am interested in the model used). Can someone explain this to me or point me to the right literature?
Any help is appreciated. Thanks!
• 948 views
•
link
written
by
prachitipprabhu •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
RNAhybrid + svm_light for miRNA target prediction
written by Lucrezia •
-
How to predict drug response or estimate drug sensitivity?
written by luffy •
-
Generating DE genes of a time series
written by Nal23 •
-
ML model to benchmark ligand / receptor interaction lists
written by Muny •
-
LOESS Normalization Explanation
written by gt •
-
Observation weights in zinbwave and it's use in deseq
written by pkallurkar •
-
zinbwave is not generating observational weights (zinbwave_1.8.0)
written by bpgrone •
-
Deseq2 Single-Cell analysis with two variables
written by michele.tebaldi.92 •
-
Assessing coverage in exome capture experiments
written by t_stranger •
-
Augustus gene prediction for non model organism
written by lakhujanivijay
