How to caculate stemness for samples from GEO
hello guys：
I have known that we can calculate the stemness for the samples from TCGA using TCGAanalyze_Stemness function in TCGAbiolinks package. （Am I right ？）
However，how to calculate the stemness for the sample from GEO？ Can someone help me？ Thank you very much！
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It's not entirely clear what your question is about, i.e. which specific problem you're encountering.
Based on the documentation of the function you mention all you technically need to calculate the stemness is "is a vector of the stemness Signature generated using gelnet package" and " a matrix of Gene expression (genes in rows, samples in cols)".