operon for rRNA genes
Hi all,
I have a draft genome of bacterial gene and try to find out whether it has an operon for respective rRNA genes (5S, 23S, 16S). I found that it has all three rRNA genes using RNAmmer, however, I'm not sure how I can find their operons.
If you have any idea, I would really appreciate that.
Thank you in advance!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
get rRNA FASTA file for a particular bacteria
written by basuanubhav •
-
Operon Mapping
written by sharmatina189059 •
-
I can not get fasta file with the hit sequences running barrnap
written by pavelasquezv •
-
how to annotate draft genome
written by zhangdengwei
-
rRNA remove from RNAseq data
written by Peter •
-
Where to download a table of operons with genes for E. coli?
written by O.rka
-
RNAmmer rna prediction
written by alebuenosm •
-
Finding marker genes in draft genome
written by runnerdaniel •
-
Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
written by bioinforesearchquestions
-
Need help with SortMeRNA error
written by sentausa
By "find their operons", you mean you want to find the genomic regions where they are located, and how many copies of the operon the draft genome has? If this is an Illumina-only draft assembly, I am afraid you won't be able to confidently ascertain both points above.
Thank you for your response! Yes I was thinking that way. This is an Illumina-only draft assembly. I found the location for each rRNA genes, but still isn't it possible to recognize the operon for each genes??